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PageMan
PageMan
Main Site
Speedtests
Setup java 1.42
Fisher Test, no p-value correction, threshold 1.0
Mapping File Afymetrix2005
Chip ATH1 (~22k Probes)
All values are averages of triplicated measures
For more than 40 experiments the heap space was increased to 1GiByte
To do so locate your Pageman.lax file and add these two lines to it
lax.nl.java.option.java.heap.size.max=1000m
lax.nl.java.option.java.heap.size.initial=500m
PageMan V 0.08
| Experiments | Centrino @1.6Ghz | | Core2Duo @2.4Ghz |
| 12 | 29 | 12.7 |
| 24 | 57.7 | 25 |
| 36 | 85.3 | 38.3 |
| 48 | 121.7 | 52 |
| 96 | 237 | 104.7 |
| 192 | ND | 216 |
PageMan V 0.11
Is approximately 20 % slower than 0.08 due to more precise p-value
correction and safer thread handling.
However, better thread handling will enable us to run calculations in
parallel on Duo Core/ Dual Processor systems in the next release.
Also algorithm improvements more than overcompensate the speed penalty
| Experiments | Centrino @1.6Ghz | | Core2Duo @2.4Ghz |
| 12 | 19 | |
| 24 | 43 | |
| 36 | 56 | |
| 48 | 76 | |
| 96 | 151 | |
| 192 | | |